Week 0 |
Prior to class |
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[Assignment 0] |
Week 1 |
1/24 & 1/26 |
- Preliminaries
- Data in Biology
- R Programming Basics
- Data Wrangling & tidyverse Basics
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Assignment 1 |
Week 2 |
1/31 & 2/2 |
- R in Biology
- Bio: Bioconductor Basics
- Data Viz: Grammar of Graphics
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Assignment 1 |
Week 3 |
2/7 & 2/9 |
- Data Sci: Data Modeling
- Bio: Gene Expression
- Bio: Microarrays
- Bio: Differential Expression: Microarrays
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Assignment 2 |
Week 4 |
2/14 & 2/16 |
- Data Sci: PCA & Clustering
- Data Vis: Heatmaps & Dendrograms
- R Programming: Structures & Iteration
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Assignment 3 |
Week 5 |
2/22 & 2/23
Note: 2/22 is a
Tuesday |
- Bio: High Throughput Sequencing
- Bio: RNASeq
- Bio: Count Data
- Bio: Differential Expression: RNASeq
- Bio: Gene Set Enrichment Analysis
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Assignment 4 |
Week 6 |
2/28 & 3/2 |
- Data Sci: Distributions
- Data Sci: Statistical Tests
- R Programming: Style & Conventions
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Assignment 5 |
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3/7 & 3/9 |
Spring Break |
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Week 7 |
3/14 & 3/16 |
- Data Viz: Responsible Plotting
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Assignment 6 |
Week 8 |
3/21 & 3/23 |
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Assignment 7 |
Week 9 |
3/28 & 3/30 |
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Assignment 7 |
Week 10 |
4/4 & 4/6 |
- Bio: Biological Networks
- Data Sci: Network Analysis
- Data Viz: Network Viz
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[Project] |
Week 11 |
4/11 & 4/13 |
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Week 12 |
4/20 |
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Week 13 |
4/25 & 4/27 |
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Week 14 |
5/2 & 5/4 |
- Course wrap up & feedback
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5/9 |
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Project due |