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BF528 - Applications in Translational Bioinformatics
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Table of contents
BF528 - Applications in Translational Bioinformatics
Guides
Computational Environments Guide
Guide for requesting appropriate computational resources on the SCC
Computational Skills Primer
SCC cluster usage
git
Computational Environment Management
Docker
Project 0
Week 1: Genome Analytics
Week 2: Genome Analytics
Week 3: Genome Analytics
Week 4: Genome Analytics
Project 1
Week 1: RNAseq
Week 2: RNAseq
Week 3: RNAseq
Week 4: RNAseq
Project 2
Week 1: ChIPseq
Week 2: ChIPseq
Week 3: ChIPseq
Week 4: ChIPseq
Final Project
Final Project - single cell RNAseq
Lectures
Introduction
Computational Pipeline Strategies
Next Generation Sequencing
Biological Data Formats
Genomics, Genes, and Genomes
Genomic Variation and SNP Analysis
Genome Editing - CRISPR Cas9
Sequence Analysis Fundamentals
Biological Databases
Writing a methods section
Sequence Analysis - RNA-Seq 1
Sequence Analysis - RNA-Seq 2
Gene sets and enrichment
Microbiome: Metagenomics
Microbiome: 16S
Proteomics
Metabolomics
Sequence Analysis - ChIP-Seq
Sequence Analysis - ATAC-Seq
Single Cell Analysis Part 1
Genome Browsers
Single Cell Analysis Part 2
Single Cell Analysis Part 3
Spatial Transcriptomics
Writing a methods section
online slides
downloadable slides
Biological Databases
Sequence Analysis - RNA-Seq 1
On this page
Writing a methods section