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BF528 - Applications in Translational Bioinformatics
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Table of contents
BF528 - Applications in Translational Bioinformatics
Guides
Computational Environments Guide
Project 0
Week 1: Genome Analytics
Week 2: Genome Analytics
Week 3: Genome Analytics
Lectures
Introduction
Genomics, Genes, and Genomes
git
Computational Pipeline Strategies
Computational Environment Management
Sequence Analysis Fundamentals
2nd Gen Sequencing
Sequence Analysis - RNA-Seq 1
Sequence Analysis - RNA-Seq 2
SCC cluster usage
Biological Data Formats
Gene sets and enrichment
Replicability vs Reproducibility Strategies
Putting it all together - snakemake
Sequence Analysis - ChIP-Seq
Genome Browsers
Sequence Analysis - ATAC-Seq
Project 2 - Week 1 Check-in
Biological Databases
Genomic Variation and SNP Analysis
Microbiome: Metagenomics
Microbiome: 16S
Proteomics
Metabolomics
Docker
Single Cell Analysis Part 1
Single Cell Analysis Part 2
Single Cell Analysis Part 3
Spatial Transcriptomics
Spatial Transcriptomics
online slides
downloadable slides
Single Cell Analysis Part 3
On this page
Spatial Transcriptomics