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BF528 - Applications in Translational Bioinformatics

Table of contents

BF528 - Applications in Translational Bioinformatics
1 Introduction
2 Genomics, Genes, and Genomes
3 Array Technologies
4 Gene sets and enrichment
5 2nd Gen Sequencing
6 Sequence Analysis Fundamentals
7 Sequence Analysis - RNA-Seq 1
8 Sequence Analysis - RNA-Seq 2
9 Genomic Variation and SNP Analysis
10 Biological Data Formats
11 Sequence Visualization
12 Sequence Analysis - ATAC-Seq
13 Sequence Analysis - ChIP-Seq
14 Biological Databases
15 Replicability vs Reproducibility Strategies
16 Computational Environment Management
17 Computational Pipeline Strategies
18 Single Cell Techniques
19 Single Cell Analysis Part 1
20 Single Cell Analysis Part 2
21 Microbiome: 16S
22 Microbiome: Metagenomics
23 Proteomics
24 Metabolomics
25 Integrative Genomics
26 Professional Development
Project Writeup Instructions
Project 1: Transcriptional Profile of Mammalian Cardiac Regeneration with mRNA-Seq
27 Project 2: ChIPseq analysis of the human transcription factor Runx1
28 Project 3: Single Cell Analysis of the Mouse Kidney

11 Sequence Visualization

downloadable slides

10 Biological Data Formats

12 Sequence Analysis - ATAC-Seq

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11 Sequence Visualization

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